classes
=======

.. automodule:: pykinetic.classes

Energy
------

.. autoclass:: pykinetic.classes.Energy
   :members:

ChemicalSystem
--------------

.. autoclass:: pykinetic.classes.ChemicalSystem
   :members:

Compound
--------

.. autoclass:: pykinetic.classes.Compound
   :members:

Reaction
--------

.. autoclass:: pykinetic.classes.Reaction
   :members:

Transition states
-----------------

.. autoclass:: pykinetic.classes.TransitionState
   :members:

.. autoclass:: pykinetic.classes.DiffusionTS
   :members:

Parameters
----------

.. autoclass:: pykinetic.classes.Parameters
   :members:

.. autoclass:: pykinetic.classes.SimulationParameters
   :members:

.. autoclass:: pykinetic.classes.ConvergenceParameters
   :members:

MassBalance
-----------

.. autoclass:: pykinetic.classes.MassBalance
   :members:

JacobianElement
---------------

.. autoclass:: pykinetic.classes.JacobianElement
   :members: